SBGNview 1.22.0-foss-2024a-R-4.5.0
SBGNview greatly extends the Pathview project by supporting multiple major pathway databases beyond KEGG. Pathview has been widely used in omics studies and data analyses, and has become the leading tool in its category.It maps, integrates and visualizes a wide range of data onto KEGG pathway graphs. Key features: Pathway diagram and definition by the widely adopted SBGN standard formats; Supports multiple major pathway databases beyond KEGG (Reactome, MetaCyc, SMPDB, PANTHER, METACROP etc) and user defined pathways; Covers 5,200 reference pathways and over 3,000 species by default; Extensive graphics controls, including glyph and edge attributes, graph layout and sub-pathway highlight; SBGN pathway data manipulation, processing, extraction and analysis.Accessing SBGNview 1.22.0-foss-2024a-R-4.5.0
To load the module for SBGNview 1.22.0-foss-2024a-R-4.5.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
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module load bear-apps/2024a
module load SBGNview/1.22.0-foss-2024a-R-4.5.0
BEAR Apps Version
Architectures
EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- gage 2.58.0
- rsvg 2.7.0
- SBGNview 1.22.0
- SBGNview.data 1.22.0
More Information
For more information visit the SBGNview website.
Dependencies
This version of SBGNview has a direct dependency on: dav1d/1.5.1-GCCcore-13.3.0 foss/2024a librsvg/2.60.0-GCCcore-13.3.0 R/4.5.0-gfbf-2024a R-bundle-Bioconductor/3.21-foss-2024a-R-4.5.0
Last modified on 26th November 2025