SGA 0.10.15-GCC-13.3.0

SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Accessing SGA 0.10.15-GCC-13.3.0

To load the module for SGA 0.10.15-GCC-13.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load SGA/0.10.15-GCC-13.3.0

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SGA website.

Dependencies

This version of SGA has a direct dependency on: BamTools/2.5.2-GCC-13.3.0 GCC/13.3.0 jemalloc/5.3.0-GCCcore-13.3.0 Pysam/0.22.1-GCC-13.3.0 ruffus/2.8.4-GCCcore-13.3.0 SAMtools/1.21-GCC-13.3.0 sparsehash/2.0.4-GCCcore-13.3.0 zlib/1.3.1-GCCcore-13.3.0

Last modified on 1st December 2025