SHAPEIT5 5.1.1-foss-2024a-20240315

Segmented HAPlotype Estimation and Imputation Tool SHAPEIT5 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.

Accessing SHAPEIT5 5.1.1-foss-2024a-20240315

To load the module for SHAPEIT5 5.1.1-foss-2024a-20240315 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load SHAPEIT5/5.1.1-foss-2024a-20240315

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SHAPEIT5 website.

Dependencies

This version of SHAPEIT5 has a direct dependency on: BCFtools/1.21-GCC-13.3.0 Boost/1.85.0-GCC-13.3.0 bzip2/1.0.8-GCCcore-13.3.0 foss/2024a HTSlib/1.21-GCC-13.3.0 libdeflate/1.20-GCCcore-13.3.0 XZ/5.4.5-GCCcore-13.3.0 zlib/1.3.1-GCCcore-13.3.0

Last modified on 2nd September 2025