SeuratDisk 20231104-foss-2024a-R-4.5.0

The h5Seurat file format is specifically designed for the storage and analysis of multi-modal single-cell and spatially-resolved expression experiments, for example, from CITE-seq or 10X Visium technologies. It holds all molecular information and associated metadata, including (for example) nearest-neighbor graphs, dimensional reduction information, spatial coordinates and image data, and cluster labels. We also support rapid and on-disk conversion between h5Seurat and AnnData objects, with the goal of enhancing interoperability between Seurat and Scanpy.

Accessing SeuratDisk 20231104-foss-2024a-R-4.5.0

To load the module for SeuratDisk 20231104-foss-2024a-R-4.5.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load SeuratDisk/20231104-foss-2024a-R-4.5.0

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SeuratDisk website.

Dependencies

This version of SeuratDisk has a direct dependency on: foss/2024a R/4.5.0-gfbf-2024a R-bundle-Bioconductor/3.21-foss-2024a-R-4.5.0

Required By

This version of SeuratDisk is a direct dependent of: SeuratWrappers/0.4.0-20241122-foss-2024a-R-4.5.0

Other Versions

These versions of SeuratDisk are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th July 2025