Sniffles 2.6.0-gfbf-2024a

A fast structural variant caller for long-read sequencing, Sniffles2 accurately detect SVs on germline, somatic and population-level for PacBio and Oxford Nanopore read data.

Accessing Sniffles 2.6.0-gfbf-2024a

To load the module for Sniffles 2.6.0-gfbf-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load Sniffles/2.6.0-gfbf-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• Sniffles 2.6.0

More Information

For more information visit the Sniffles website.

Dependencies

This version of Sniffles has a direct dependency on: edlib/1.3.9.post1-GCC-13.3.0 gfbf/2024a Pysam/0.22.1-GCC-13.3.0 Python/3.12.3-GCCcore-13.3.0 SciPy-bundle/2024.05-gfbf-2024a

Last modified on 26th March 2026