SyRI 1.7.1-foss-2024a
Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.Accessing SyRI 1.7.1-foss-2024a
To load the module for SyRI 1.7.1-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2024a
module load SyRI/1.7.1-foss-2024a
BEAR Apps Version
Architectures
EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the SyRI website.
Dependencies
This version of SyRI has a direct dependency on: foss/2024a longestrunsubsequence/1.0.1-foss-2024a matplotlib/3.9.2-gfbf-2024a PuLP/2.8.0-foss-2024a Pysam/0.22.1-GCC-13.3.0 Python/3.12.3-GCCcore-13.3.0 Python-bundle-PyPI/2024.06-GCCcore-13.3.0 python-igraph/0.11.9-foss-2024a SciPy-bundle/2024.05-gfbf-2024a
Last modified on 13th August 2025