fMRIPrep 25.1.4-foss-2024a

fMRIPrep is an analysis-agnostic tool that addresses the challenge of robust and reproducible preprocessing for task-based and resting fMRI data. fMRIPrep automatically adapts a best-in-breed workflow to the idiosyncrasies of virtually any dataset, ensuring high-quality preprocessing without manual intervention. fMRIPrep robustly produces high-quality results on diverse fMRI data. Additionally, fMRIPrep introduces less uncontrolled spatial smoothness than observed with commonly used preprocessing tools. fMRIPrep equips neuroscientists with an easy-to-use and transparent preprocessing workflow, which can help ensure the validity of inference and the interpretability of results.

Accessing fMRIPrep 25.1.4-foss-2024a

To load the module for fMRIPrep 25.1.4-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load fMRIPrep/25.1.4-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

  • anyio 4.9.0
  • APScheduler 3.11.0
  • arrow 1.3.0
  • bids-validator-1.14.7.post0
  • bidsschematools 1.0.4
  • bokeh 3.5.2
  • codecarbon 2.8.3
  • fief-client-0.20.0
  • fmriprep 25.1.4
  • formulaic 1.1.1
  • frozendict 2.4.6
  • h11 0.14.0
  • httpcore 1.0.7
  • httpx 0.27.2
  • indexed-gzip-1.9.4
  • interface-meta-1.3.0
  • jwcrypto 1.5.6
  • latexcodec 3.0.0
  • looseversion 1.3.0
  • mapca 0.0.5
  • migas 0.4.0
  • nireports 25.3.0
  • nitime 0.11
  • nitransforms 24.1.1
  • niworkflows 1.14.2
  • num2words 0.5.14
  • nvidia-ml-py-12.570.86
  • packaging 24.2
  • prometheus-client-0.21.1
  • prompt-toolkit-3.0.50
  • py-cpuinfo-9.0.0
  • pybids 0.19.0
  • pybtex 0.24.0
  • pybtex 0.24.0
  • pybtex-apa-style-1.3
  • pybtex-docutils-1.0.3
  • pynvml 12.0.0
  • questionary 2.1.0
  • robustica 0.1.4
  • sdcflows 2.13.2
  • sentry-sdk-2.26.1
  • setuptools 77.0.3
  • smriprep 0.19.2
  • sniffio 1.3.1
  • svgutils 0.3.4
  • tedana 25.0.1
  • templateflow 25.0.4
  • transforms3d 0.4.2
  • typer 0.15.2
  • types-python-dateutil-2.9.0.20240316
  • tzlocal 5.3.1
  • universal-pathlib-0.2.6
  • wrapt 1.17.2

More Information

For more information visit the fMRIPrep website.

Dependencies

This version of fMRIPrep has a direct dependency on: foss/2024a h5py/3.12.1-foss-2024a matplotlib/3.9.2-gfbf-2024a NiBabel/5.2.1-gfbf-2024a Nilearn/0.10.4-gfbf-2024a Nipype/1.9.2-gfbf-2024a Python/3.12.3-GCCcore-13.3.0 PyYAML/6.0.2-GCCcore-13.3.0 scikit-image/0.25.0-foss-2024a scikit-learn/1.5.2-gfbf-2024a SciPy-bundle/2024.05-gfbf-2024a Seaborn/0.13.2-gfbf-2024a SQLAlchemy/2.0.36-GCCcore-13.3.0 tqdm/4.66.5-GCCcore-13.3.0 zlib/1.3.1-GCCcore-13.3.0

Last modified on 14th October 2025