modkit 0.5.0-GCCcore-13.3.0

A bioinformatics tool for working with modified bases from Oxford Nanopore. Specifically for converting modBAM to bedMethyl files using best practices, but also manipulating modBAM files and generating summary statistics.

Accessing modkit 0.5.0-GCCcore-13.3.0

To load the module for modkit 0.5.0-GCCcore-13.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load modkit/0.5.0-GCCcore-13.3.0

BEAR Apps Version

2024a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the modkit website.

Dependencies

This version of modkit has a direct dependency on: GCCcore/13.3.0

Other Versions

These versions of modkit are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2025