Compass

Compass is an algorithm to characterize the metabolic state of cells based on single-cell RNA-Seq and flux balance analysis (FBA). Its development was motivated by the challenge in characterizing the metabolic states of single cells on scale with current metabolic assays. Compass is an in silico approach to infer metabolic status of cells based on transcriptome data, which is readily available even in single cell resolutions. For a detailed description of the algorithm, refer to Wagner et al., Cell 2021

More Information

For more information visit the Compass website.

Available Versions

These versions of Compass are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.