junctionCounts

junctionCounts (https://doi.org/10.1093/nargab/lqae093) is a tool intended to identify and quantify binary alternative splicing events from RNA-seq data. junctionCounts currently consists of two primary utilities: infer_pairwise_events.py, which identifies binary alternative splicing events (e.g. skipped exon events), and junctionCounts.py, which quantifies those events (i.e. provides a percent-spliced-in, or PSI value) from RNA-seq data (specifically from a BAM file).

More Information

For more information visit the junctionCounts website.

Available Versions

These versions of junctionCounts are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.