mixedploidy-entropy

This is a model for quantifying population structure in autopolyploid and mixed-ploidy individuals using genotype-likelihood data. The repository contains the model written in C++ along with example files to help you get started with the analysis. The methods are described in Shastry, V., Adams, P.E., Lindtke, D., Mandeville, E.G., Parchman, T.L., Gompert, Z. and Buerkle, C.A. (2021), Model-based genotype and ancestry estimation for potential hybrids with mixed-ploidy. Molecular Ecology Resources 21: 1434-1451. https://doi.org/10.1111/1755-0998.13330

More Information

For more information visit the mixedploidy-entropy website.

Available Versions

These versions of mixedploidy-entropy are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.