nanomix

Nanomix: Methylation Deconvolution of Nanopore Sequencing Data. Methylation deconvolution is the process of determining the proportion of distinct cell types in a complex (hetergeneic) mixture of cell or cell free DNA. This tool provides suitable models for performing deconvolution on Nanopore sequencing data. In particular our new models account for the non-uniform coverage distribution and high error rate in modified base calling. We also include more typical deconvolution models for deconvolution of bisulfite sequencing data or bead chip arrays.

More Information

For more information visit the nanomix website.

Available Versions

These versions of nanomix are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.