Installed Applications: 2024a

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
Abseil 20240722.0-GCCcore-13.3.0
Armadillo 14.0.3-foss-2024a
arpack-ng 3.9.1-foss-2024a
Arrow 17.0.0-gfbf-2024a
arrow-R 17.0.0.1-foss-2024a-R-4.5.0
ASE 3.24.0-gfbf-2024a
Autoconf 2.72-GCCcore-13.3.0
Automake 1.16.5-GCCcore-13.3.0
Autotools 20231222-GCCcore-13.3.0
BamTools 2.5.2-GCC-13.3.0
BCFtools 1.21-GCC-13.3.0
BEAR-R-bio 2024a-foss-2024a-R-4.5.0
BEDTools 2.31.1-GCC-13.3.0
binutils 2.42-GCCcore-13.3.0
binutils 2.42
binutils 2.40
Biopython 1.84-foss-2024a
Bison 3.8.2-GCCcore-13.3.0
Bison 3.8.2
BLAST+ 2.16.0-gompi-2024a
BLIS 1.0-GCC-13.3.0
Boost 1.85.0-GCC-13.3.0
Brotli 1.1.0-GCCcore-13.3.0
Brunsli 0.1-GCCcore-13.3.0
bzip2 1.0.8-GCCcore-13.3.0
cairo 1.18.0-GCCcore-13.3.0
Catch2 2.13.10-GCCcore-13.3.0
CD-HIT 4.8.1-GCC-13.3.0
cffi 1.16.0-GCCcore-13.3.0
CFITSIO 4.4.1-GCCcore-13.3.0
CMake 3.29.3-GCCcore-13.3.0
cpio 2.15-GCCcore-13.3.0
cppy 1.2.1-GCCcore-13.3.0
cryptography 42.0.8-GCCcore-13.3.0
CUDA 12.6.0
cuDNN 9.8.0.87-CUDA-12.6.0
cURL 8.7.1-GCCcore-13.3.0
Cython 3.0.10-GCCcore-13.3.0
DeltaLake 1.1.0-gfbf-2024a
Doxygen 1.11.0-GCCcore-13.3.0
Dsuite 20241219-intel-compilers-2024.2.0
Dsuite 20241219-GCC-13.3.0
Eigen 3.4.0-GCCcore-13.3.0
expat 2.6.2-GCCcore-13.3.0
FFTW 3.3.10-GCC-13.3.0
FFTW.MPI 3.3.10-gompi-2024a
FLAC 1.4.3-GCCcore-13.3.0
Flask 3.0.3-GCCcore-13.3.0
flex 2.6.4-GCCcore-13.3.0
FlexiBLAS 3.4.4-GCC-13.3.0
flit 3.9.0-GCCcore-13.3.0
fontconfig 2.15.0-GCCcore-13.3.0
fonttools 4.53.1-GCCcore-13.3.0
foss 2024a
freetype 2.13.2-GCCcore-13.3.0
FriBidi 1.0.15-GCCcore-13.3.0
fseq2 2.0.4-foss-2024a
fumi_tools 0.18.2-GCC-13.3.0
GCC 13.3.0
GCCcore 13.3.0
GDAL 3.10.0-foss-2024a
GDRCopy 2.4.1-GCCcore-13.3.0
GEOS 3.12.2-GCC-13.3.0
gettext 0.22.5-GCCcore-13.3.0
gettext 0.22.5
gfbf 2024a
Ghostscript 10.03.1-GCCcore-13.3.0
giflib 5.2.1-GCCcore-13.3.0
git 2.45.1-GCCcore-13.3.0
GLib 2.80.4-GCCcore-13.3.0
GLPK 5.0-GCCcore-13.3.0
GMP 6.3.0-GCCcore-13.3.0
GObject-Introspection 1.80.1-GCCcore-13.3.0
gompi 2024a
googletest 1.15.2-GCCcore-13.3.0
gperf 3.1-GCCcore-13.3.0
groff 1.23.0-GCCcore-13.3.0
GSL 2.8-GCC-13.3.0
gzip 1.13-GCCcore-13.3.0
h5py 3.12.1-foss-2024a
HarfBuzz 9.0.0-GCCcore-13.3.0
hatchling 1.24.2-GCCcore-13.3.0
HDF 4.3.0-GCCcore-13.3.0
HDF5 1.14.5-gompi-2024a
help2man 1.49.3-GCCcore-13.3.0
HPL 2.3-intel-2024a
HPL 2.3-foss-2024a
HTSlib 1.21-GCC-13.3.0
hwloc 2.10.0-GCCcore-13.3.0
hypothesis 6.103.1-GCCcore-13.3.0
ICU 75.1-GCCcore-13.3.0
iimpi 2024a
ImageMagick 7.1.1-38-GCCcore-13.3.0
Imath 3.1.11-GCCcore-13.3.0
imkl 2024.2.0
imkl-FFTW 2024.2.0-iimpi-2024a
impi 2021.13.0-intel-compilers-2024.2.0
intel 2024a
intel-compilers 2024.2.0
intltool 0.51.0-GCCcore-13.3.0
ipykernel 6.29.5-GCCcore-13.3.0
IPython 8.28.0-GCCcore-13.3.0
IRkernel 1.3.2-gfbf-2024a-R-4.5.0
JasPer 4.2.4-GCCcore-13.3.0
Java 17.0.15
jax 0.6.1-foss-2024a-CUDA-12.6.0
jax 0.6.1-foss-2024a
jbigkit 2.1-GCCcore-13.3.0
jedi 0.19.1-GCCcore-13.3.0
json-c 0.17-GCCcore-13.3.0
JsonCpp 1.9.5-GCCcore-13.3.0
LAME 3.100-GCCcore-13.3.0
LERC 4.0.0-GCCcore-13.3.0
libarchive 3.7.4-GCCcore-13.3.0
libdeflate 1.20-GCCcore-13.3.0
libdrm 2.4.122-GCCcore-13.3.0
libevent 2.1.12-GCCcore-13.3.0
libfabric 1.21.0-GCCcore-13.3.0
libffi 3.4.5-GCCcore-13.3.0
libgeotiff 1.7.3-GCCcore-13.3.0
libgit2 1.8.1-GCCcore-13.3.0
libGLU 9.0.3-GCCcore-13.3.0
libglvnd 1.7.0-GCCcore-13.3.0
libiconv 1.17-GCCcore-13.3.0
libjpeg-turbo 3.0.1-GCCcore-13.3.0
libogg 1.3.5-GCCcore-13.3.0
libopus 1.5.2-GCCcore-13.3.0
libpciaccess 0.18.1-GCCcore-13.3.0
libpng 1.6.43-GCCcore-13.3.0
libreadline 8.2-GCCcore-13.3.0
libsndfile 1.2.2-GCCcore-13.3.0
libsodium 1.0.20-GCCcore-13.3.0
LibTIFF 4.6.0-GCCcore-13.3.0
libtirpc 1.3.5-GCCcore-13.3.0
libtool 2.4.7-GCCcore-13.3.0
libunwind 1.8.1-GCCcore-13.3.0
libvorbis 1.3.7-GCCcore-13.3.0
libwebp 1.4.0-GCCcore-13.3.0
libxml2 2.12.7-GCCcore-13.3.0
libxslt 1.1.42-GCCcore-13.3.0
lifelines 0.30.0-gfbf-2024a
lit 18.1.8-GCCcore-13.3.0
LittleCMS 2.16-GCCcore-13.3.0
LLVM 18.1.8-GCCcore-13.3.0-minimal
LLVM 14.0.6-GCCcore-13.3.0-llvmlite
LMDB 0.9.31-GCCcore-13.3.0
lxml 5.3.0-GCCcore-13.3.0
lz4 1.9.4-GCCcore-13.3.0
M4 1.4.19-GCCcore-13.3.0
M4 1.4.19
make 4.4.1-GCCcore-13.3.0
makeinfo 7.1-GCCcore-13.3.0
Mako 1.3.5-GCCcore-13.3.0
matplotlib 3.9.2-gfbf-2024a
maturin 1.9.1-GCCcore-13.3.0
maturin 1.6.0-GCCcore-13.3.0
Mesa 24.1.3-GCCcore-13.3.0
Meson 1.4.0-GCCcore-13.3.0
meson-python 0.16.0-GCCcore-13.3.0
MiXCR 4.7.0-Java-17
modkit 0.5.0-GCCcore-13.3.0
Monocle3 1.4.26-foss-2024a-R-4.5.0
MPFR 4.2.1-GCCcore-13.3.0
mpi4py 4.0.1-gompi-2024a
MUSCLE 3.8.31-GCCcore-13.3.0
NASM 2.16.03-GCCcore-13.3.0
NCCL 2.22.3-GCCcore-13.3.0-CUDA-12.6.0
ncurses 6.5-GCCcore-13.3.0
ncurses 6.5
netCDF 4.9.2-gompi-2024a
nettle 3.10-GCCcore-13.3.0
Ninja 1.12.1-GCCcore-13.3.0
nlohmann_json 3.11.3-GCCcore-13.3.0
NLopt 2.7.1-GCCcore-13.3.0
nodejs 20.13.1-GCCcore-13.3.0
NSPR 4.35-GCCcore-13.3.0
NSS 3.104-GCCcore-13.3.0
numactl 2.0.18-GCCcore-13.3.0
numba 0.60.0-foss-2024a
OpenBLAS 0.3.27-GCC-13.3.0
OpenEXR 3.2.4-GCCcore-13.3.0
OpenJPEG 2.5.2-GCCcore-13.3.0
OpenMPI 5.0.3-GCC-13.3.0
OpenPGM 5.2.122-GCCcore-13.3.0
openpyxl 3.1.5-GCCcore-13.3.0
OpenSSL 3
OSU-Micro-Benchmarks 7.4-iimpi-2024a
OSU-Micro-Benchmarks 7.4-gompi-2024a
Pango 1.54.0-GCCcore-13.3.0
patchelf 0.18.0-GCCcore-13.3.0
PCRE 8.45-GCCcore-13.3.0
PCRE2 10.43-GCCcore-13.3.0
Perl 5.38.2-GCCcore-13.3.0
Perl 5.38.0
Perl-bundle-CPAN 5.38.2-GCCcore-13.3.0
pigz 2.8-GCCcore-13.3.0
Pillow 10.4.0-GCCcore-13.3.0
Pillow-SIMD 10.4.0-GCCcore-13.3.0
pixman 0.43.4-GCCcore-13.3.0
pkgconf 2.2.0-GCCcore-13.3.0
pkgconf 1.8.0
PMIx 5.0.2-GCCcore-13.3.0
poetry 1.8.3-GCCcore-13.3.0
polars 1.31.0-gfbf-2024a
PostgreSQL 16.4-GCCcore-13.3.0
presto 1.0.0-20240518-foss-2024a-R-4.5.0
pRESTO 0.7.4-foss-2024a
PROJ 9.4.1-GCCcore-13.3.0
PRRTE 3.0.5-GCCcore-13.3.0
pybedtools 0.11.0-foss-2024a
pyBigWig 0.3.24-gfbf-2024a
pybind11 2.12.0-GCC-13.3.0
Pysam 0.22.1-GCC-13.3.0
Python 3.12.3-GCCcore-13.3.0
Python-bundle-PyPI 2024.06-GCCcore-13.3.0
PyZMQ 26.2.0-GCCcore-13.3.0
Qhull 2020.2-GCCcore-13.3.0
R 4.5.0-gfbf-2024a
RapidJSON 1.1.0-20240815-GCCcore-13.3.0
R-bundle-Bioconductor 3.21-foss-2024a-R-4.5.0
R-bundle-CRAN 2025.06-foss-2024a
RE2 2024-07-02-GCCcore-13.3.0
Rust 1.86.0-GCCcore-13.3.0
Rust 1.78.0-GCCcore-13.3.0
SAMtools 1.21-GCC-13.3.0
ScaLAPACK 2.2.0-gompi-2024a-fb
scikit-build 0.17.6-GCCcore-13.3.0
scikit-build-core 0.10.6-GCCcore-13.3.0
scikit-learn 1.5.2-gfbf-2024a
SciPy-bundle 2024.05-gfbf-2024a
setuptools-rust 1.9.0-GCCcore-13.3.0
setuptools-rust 1.11.1-GCCcore-13.3.0
SeuratDisk 20231104-foss-2024a-R-4.5.0
SeuratWrappers 0.4.0-20241122-foss-2024a-R-4.5.0
snappy 1.2.1-GCCcore-13.3.0
spglib-python 2.5.0-gfbf-2024a
SQLite 3.45.3-GCCcore-13.3.0
statsmodels 0.14.4-gfbf-2024a
SWIG 4.2.1-GCCcore-13.3.0
Szip 2.1.1-GCCcore-13.3.0
Tcl 8.6.14-GCCcore-13.3.0
Tk 8.6.14-GCCcore-13.3.0
Tkinter 3.12.3-GCCcore-13.3.0
tornado 6.4.1-GCCcore-13.3.0
tqdm 4.66.5-GCCcore-13.3.0
UCC 1.3.0-GCCcore-13.3.0
UCX 1.16.0-GCCcore-13.3.0
UCX-CUDA 1.16.0-GCCcore-13.3.0-CUDA-12.6.0
UDUNITS 2.2.28-GCCcore-13.3.0
ULaMDyn 1.1.1-foss-2024a
UnZip 6.0-GCCcore-13.3.0
USEARCH 11.0.667-i86linux32
utf8proc 2.9.0-GCCcore-13.3.0
util-linux 2.40-GCCcore-13.3.0
virtualenv 20.26.2-GCCcore-13.3.0
VSEARCH 2.30.0-GCC-13.3.0
Wayland 1.23.0-GCCcore-13.3.0
wrapt 1.16.0-gfbf-2024a
X11 20240607-GCCcore-13.3.0
Xerces-C++ 3.2.5-GCCcore-13.3.0
xorg-macros 1.20.1-GCCcore-13.3.0
Xvfb 21.1.14-GCCcore-13.3.0
XZ 5.4.5-GCCcore-13.3.0
ZeroMQ 4.3.5-GCCcore-13.3.0
zlib 1.3.1-GCCcore-13.3.0
zlib 1.3.1
zlib 1.2.13
zstd 1.5.6-GCCcore-13.3.0