Installed Applications: 2024a and EL8-icelake

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2024a or EL8-icelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Some of the nodes of this architecture have GPUs. The applications that run on the GPU nodes will usually have CUDA or fosscuda as part of the version. Please see the GPU information page for details about the available GPUs and targetting jobs to specific GPU types. The available GPU types are:

  • NVIDIA A100
  • NVIDIA A30
Application Version
Abseil 20240722.0-GCCcore-13.3.0
alsa-lib 1.2.10
anndata 0.10.9-foss-2024a
ANSYS 2025R2
ANSYS_Rocky 2025R2
Archive-Zip 1.68-GCCcore-13.3.0
archspec 0.2.5-GCCcore-13.3.0
Armadillo 14.0.3-foss-2024a
arpack-ng 3.9.1-foss-2024a
Arriba 2.5.0-GCC-13.3.0
Arrow 17.0.0-gfbf-2024a
arrow-R 17.0.0.1-foss-2024a-R-4.5.0
ASE 3.24.0-gfbf-2024a
assimp 5.4.3-GCCcore-13.3.0
ATK 2.38.0-GCCcore-13.3.0
at-spi2-atk 2.38.0-GCCcore-13.3.0
at-spi2-core 2.54.0-GCCcore-13.3.0
AUGUSTUS 3.5.0-foss-2024a
Autoconf 2.72-GCCcore-13.3.0
Automake 1.16.5-GCCcore-13.3.0
Autotools 20231222-GCCcore-13.3.0
BamTools 2.5.2-GCC-13.3.0
BBMap 39.19-GCC-13.3.0
BCFtools 1.21-GCC-13.3.0
beagle-lib 4.0.1-GCC-13.3.0-CUDA-12.6.0
beagle-lib 4.0.1-GCC-13.3.0
BEAR-R-bio 2024a-foss-2024a-R-4.5.0
Beast 2.7.8-GCC-13.3.0-CUDA-12.6.0
Beast 2.7.8-GCC-13.3.0
BeautifulSoup 4.12.3-GCCcore-13.3.0
BEDTools 2.31.1-GCC-13.3.0
binutils 2.42-GCCcore-13.3.0
binutils 2.42
binutils 2.40
Bio-DB-HTS 3.01-GCC-13.3.0
BioPerl 1.7.8-GCCcore-13.3.0
Biopython 1.84-gfbf-2024a
Biopython 1.84-foss-2024a
Bison 3.8.2-GCCcore-13.3.0
Bison 3.8.2
BLAST+ 2.16.0-gompi-2024a
BLIS 1.0-GCC-13.3.0
bokeh 3.6.0-gfbf-2024a
Boost 1.85.0-GCC-13.3.0
boto3 1.35.36-GCCcore-13.3.0
Brotli 1.1.0-GCCcore-13.3.0
Brunsli 0.1-GCCcore-13.3.0
BUSCO 6.0.0-foss-2024a
bzip2 1.0.8-GCCcore-13.3.0
cairo 1.18.0-GCCcore-13.3.0
cargo-c 0.10.14-GCCcore-13.3.0
Catch2 3.8.0-GCCcore-13.3.0
Catch2 2.13.10-GCCcore-13.3.0
Cbc 2.10.12-foss-2024a
CD-HIT 4.8.1-GCC-13.3.0
CeleScope 2.9.0-foss-2024a
cffi 1.16.0-GCCcore-13.3.0
CFITSIO 4.4.1-GCCcore-13.3.0
CGAL 5.6.1-GCCcore-13.3.0
Cgl 0.60.8-foss-2024a
Clang 18.1.8-GCCcore-13.3.0
Clp 1.17.10-foss-2024a
CMake 3.31.8-GCCcore-13.3.0
CMake 3.29.3-GCCcore-13.3.0
CoinUtils 2.11.12-GCC-13.3.0
Compress-Raw-Zlib 2.213-GCCcore-13.3.0
corner 2.2.3-gfbf-2024a
cpio 2.15-GCCcore-13.3.0
cppy 1.2.1-GCCcore-13.3.0
cryptography 42.0.8-GCCcore-13.3.0
CUDA 12.6.0
cuDNN 9.8.0.87-CUDA-12.6.0
curatedMetagenomicData 3.16.1-foss-2024a-R-4.5.0
cURL 8.7.1-GCCcore-13.3.0
cutadapt 5.1-GCCcore-13.3.0
Cython 3.0.10-GCCcore-13.3.0
dask 2025.5.1-gfbf-2024a
dask 2024.9.1-gfbf-2024a
dav1d 1.5.1-GCCcore-13.3.0
DB 18.1.40-GCCcore-13.3.0
DBD-mysql 4.051-GCC-13.3.0
DB_File 1.859-GCCcore-13.3.0
DBus 1.15.8-GCCcore-13.3.0
DeltaLake 1.1.0-gfbf-2024a
DendroPy 5.0.8-GCCcore-13.3.0
dill 0.3.9-GCCcore-13.3.0
doppio 1.2.1
double-conversion 3.3.0-GCCcore-13.3.0
Doxygen 1.11.0-GCCcore-13.3.0
Dsuite 20241219-intel-compilers-2024.2.0
Dsuite 20241219-GCC-13.3.0
DuckDB 1.4.2-linux-amd64
Eigen 3.4.0-GCCcore-13.3.0
emcee 3.1.4-foss-2024a
expat 2.6.2-GCCcore-13.3.0
fastsimcoal 2.8-GCCcore-13.3.0
FFmpeg 7.0.2-GCCcore-13.3.0
ffnvcodec 12.2.72.0
FFTW 3.3.10-GCC-13.3.0
FFTW.MPI 3.3.10-gompi-2024a
Fiona 1.10.1-foss-2024a
FLAC 1.4.3-GCCcore-13.3.0
Flask 3.0.3-GCCcore-13.3.0
flex 2.6.4-GCCcore-13.3.0
FlexiBLAS 3.4.4-GCC-13.3.0
flit 3.9.0-GCCcore-13.3.0
fMRIPrep 25.1.4-foss-2024a
fmt 11.0.2-GCCcore-13.3.0
fontconfig 2.15.0-GCCcore-13.3.0
fonttools 4.53.1-GCCcore-13.3.0
formulaic 1.2.1-gfbf-2024a
foss 2024a
freetype 2.13.2-GCCcore-13.3.0
FriBidi 1.0.15-GCCcore-13.3.0
fseq2 2.0.4-foss-2024a
FSL 6.0.7.19
fumi_tools 0.18.2-GCC-13.3.0
GCC 13.3.0
GCCcore 13.3.0
GDAL 3.10.0-foss-2024a
Gdk-Pixbuf 2.42.11-GCCcore-13.3.0
GDRCopy 2.4.1-GCCcore-13.3.0
geopandas 1.1.1-foss-2024a
GEOS 3.12.2-GCC-13.3.0
gettext 0.22.5-GCCcore-13.3.0
gettext 0.22.5
gfbf 2024a
Ghostscript 10.03.1-GCCcore-13.3.0
giflib 5.2.1-GCCcore-13.3.0
git 2.45.1-GCCcore-13.3.0
GLib 2.80.4-GCCcore-13.3.0
GLPK 5.0-GCCcore-13.3.0
GMP 6.3.0-GCCcore-13.3.0
gmpy2 2.2.0-GCCcore-13.3.0
gnuplot 6.0.1-GCCcore-13.3.0
GObject-Introspection 1.80.1-GCCcore-13.3.0
gompi 2024a
googletest 1.15.2-GCCcore-13.3.0
gperf 3.1-GCCcore-13.3.0
graphite2 1.3.14-GCCcore-13.3.0
Graphviz 12.2.0-GCCcore-13.3.0
Greenlet 3.1.1-GCCcore-13.3.0
groff 1.23.0-GCCcore-13.3.0
GSL 2.8-GCC-13.3.0
GTK3 3.24.42-GCCcore-13.3.0
GTS 0.7.6-GCCcore-13.3.0
gzip 1.13-GCCcore-13.3.0
h5py 3.12.1-foss-2024a
HarfBuzz 9.0.0-GCCcore-13.3.0
hatchling 1.24.2-GCCcore-13.3.0
HDF 4.3.0-GCCcore-13.3.0
HDF5 1.14.5-iimpi-2024a
HDF5 1.14.5-gompi-2024a
help2man 1.49.3-GCCcore-13.3.0
HMMER 3.4-gompi-2024a
HPL 2.3-intel-2024a
HPL 2.3-foss-2024a
HTSlib 1.21-GCC-13.3.0
hwloc 2.10.0-GCCcore-13.3.0
hypothesis 6.103.1-GCCcore-13.3.0
ICU 75.1-GCCcore-13.3.0
igraph 0.10.16-foss-2024a
IGV 2.19.5-Java-21
iimpi 2024a
imageio 2.36.1-gfbf-2024a
ImageMagick 7.1.1-38-GCCcore-13.3.0
Imath 3.1.11-GCCcore-13.3.0
imkl 2024.2.0
imkl-FFTW 2024.2.0-iimpi-2024a
impi 2021.13.0-intel-compilers-2024.2.0
intel 2024a
intel-compilers 2024.2.0
intltool 0.51.0-GCCcore-13.3.0
ipykernel 6.29.5-GCCcore-13.3.0
IPython 8.28.0-GCCcore-13.3.0
IRkernel 1.3.2-gfbf-2024a-R-4.5.0
ISA-L 2.31.0-GCCcore-13.3.0
JasPer 4.2.4-GCCcore-13.3.0
Java 21.0.7
Java 21
Java 17.0.15
jax 0.6.1-foss-2024a-CUDA-12.6.0
jax 0.6.1-foss-2024a
jbigkit 2.1-GCCcore-13.3.0
jedi 0.19.1-GCCcore-13.3.0
jemalloc 5.3.0-GCCcore-13.3.0
json-c 0.17-GCCcore-13.3.0
JsonCpp 1.9.5-GCCcore-13.3.0
Judy 1.0.5-GCCcore-13.3.0
Julia 1.12.2-linux-x86_64
Kaleido 0.2.1-GCCcore-13.3.0
kim-api 2.4.1-GCC-13.3.0
LAME 3.100-GCCcore-13.3.0
LAMMPS 22Jul2025-foss-2024a-kokkos
leidenalg 0.10.2-foss-2024a
LERC 4.0.0-GCCcore-13.3.0
libaio 0.3.113-GCCcore-13.3.0
libarchive 3.7.4-GCCcore-13.3.0
libcerf 2.4-GCCcore-13.3.0
libdeflate 1.20-GCCcore-13.3.0
libdrm 2.4.122-GCCcore-13.3.0
libepoxy 1.5.10-GCCcore-13.3.0
libevent 2.1.12-GCCcore-13.3.0
libfabric 1.21.0-GCCcore-13.3.0
libffi 3.4.5-GCCcore-13.3.0
libgd 2.3.3-GCCcore-13.3.0
libgeotiff 1.7.3-GCCcore-13.3.0
libgit2 1.8.1-GCCcore-13.3.0
libGLU 9.0.3-GCCcore-13.3.0
libglvnd 1.7.0-GCCcore-13.3.0
libiconv 1.17-GCCcore-13.3.0
libjpeg-turbo 3.0.1-GCCcore-13.3.0
libleidenalg 0.11.1-foss-2024a
libogg 1.3.5-GCCcore-13.3.0
libopus 1.5.2-GCCcore-13.3.0
libpciaccess 0.18.1-GCCcore-13.3.0
libpng 1.6.43-GCCcore-13.3.0
libreadline 8.2-GCCcore-13.3.0
librsvg 2.60.0-GCCcore-13.3.0
libsndfile 1.2.2-GCCcore-13.3.0
libsodium 1.0.20-GCCcore-13.3.0
libspatialindex 2.0.0-GCCcore-13.3.0
LibTIFF 4.6.0-GCCcore-13.3.0
libtirpc 1.3.5-GCCcore-13.3.0
libtool 2.4.7-GCCcore-13.3.0
libunwind 1.8.1-GCCcore-13.3.0
libvorbis 1.3.7-GCCcore-13.3.0
libwebp 1.4.0-GCCcore-13.3.0
libxml2 2.12.7-GCCcore-13.3.0
libxslt 1.1.42-GCCcore-13.3.0
libyaml 0.2.5-GCCcore-13.3.0
lifelines 0.30.0-gfbf-2024a
lit 18.1.8-GCCcore-13.3.0
LittleCMS 2.16-GCCcore-13.3.0
LLVM 18.1.8-GCCcore-13.3.0-minimal
LLVM 18.1.8-GCCcore-13.3.0
LLVM 14.0.6-GCCcore-13.3.0-llvmlite
LMDB 0.9.31-GCCcore-13.3.0
longestrunsubsequence 1.0.1-foss-2024a
lpsolve 5.5.2.11-GCC-13.3.0
Lua 5.4.7-GCCcore-13.3.0
lxml 5.3.0-GCCcore-13.3.0
lz4 1.9.4-GCCcore-13.3.0
LZO 2.10-GCCcore-13.3.0
M4 1.4.19-GCCcore-13.3.0
M4 1.4.19
make 4.4.1-GCCcore-13.3.0
makeinfo 7.1-GCCcore-13.3.0
Mako 1.3.5-GCCcore-13.3.0
MariaDB 11.7.0-GCC-13.3.0
matplotlib 3.9.2-gfbf-2024a
maturin 1.9.1-GCCcore-13.3.0
maturin 1.6.0-GCCcore-13.3.0
mcpl 2.2.0-foss-2024a
MDI 1.4.26-gompi-2024a
Mesa 24.1.3-GCCcore-13.3.0
Meson 1.4.0-GCCcore-13.3.0
meson-python 0.16.0-GCCcore-13.3.0
MetaEuk 7-GCC-13.3.0
METIS 5.1.0-GCCcore-13.3.0
Miniforge3 25.3.0-3
miniprot 0.18-GCCcore-13.3.0
MiXCR 4.7.0-Java-17
modkit 0.5.0-GCCcore-13.3.0
momepy 0.10.0-foss-2024a
Monocle3 1.4.26-foss-2024a-R-4.5.0
MPC 1.3.1-GCCcore-13.3.0
MPFR 4.2.1-GCCcore-13.3.0
mpi4py 4.0.1-gompi-2024a
Mugsy 1.2.3-GCCcore-13.3.0
MultiQC 1.32-foss-2024a
MUMPS 5.7.2-foss-2024a-metis
MUSCLE 3.8.31-GCCcore-13.3.0
NASM 2.16.03-GCCcore-13.3.0
NCCL 2.22.3-GCCcore-13.3.0-CUDA-12.6.0
ncurses 6.5-GCCcore-13.3.0
ncurses 6.5
netCDF 4.9.2-gompi-2024a
netcdf4-python 1.7.1.post2-foss-2024a
nettle 3.10-GCCcore-13.3.0
networkx 3.4.2-gfbf-2024a
Nextflow 25.04.6
NiBabel 5.2.1-gfbf-2024a
Nilearn 0.10.4-gfbf-2024a
Ninja 1.12.1-GCCcore-13.3.0
Nipype 1.9.2-gfbf-2024a
nlohmann_json 3.11.3-GCCcore-13.3.0
NLopt 2.7.1-GCCcore-13.3.0
nodejs 20.13.1-GCCcore-13.3.0
NSPR 4.35-GCCcore-13.3.0
NSS 3.104-GCCcore-13.3.0
numactl 2.0.18-GCCcore-13.3.0
numba 0.60.0-foss-2024a
OpenBLAS 0.3.27-GCC-13.3.0
OpenEXR 3.2.4-GCCcore-13.3.0
OpenFOAM 13-foss-2024a-20251009
OpenJPEG 2.5.2-GCCcore-13.3.0
OpenMC 0.15.2-foss-2024a
OpenMPI 5.0.3-GCC-13.3.0
OpenPGM 5.2.122-GCCcore-13.3.0
openpyxl 3.1.5-GCCcore-13.3.0
OpenSSL 3
Osi 0.108.11-GCC-13.3.0
OSU-Micro-Benchmarks 7.4-iimpi-2024a
OSU-Micro-Benchmarks 7.4-gompi-2024a
Pango 1.54.0-GCCcore-13.3.0
ParaView 5.13.2-foss-2024a
ParMETIS 4.0.3-gompi-2024a
patchelf 0.18.0-GCCcore-13.3.0
PCRE 8.45-GCCcore-13.3.0
PCRE2 10.43-GCCcore-13.3.0
PDM 2.18.2-GCCcore-13.3.0
Perl 5.38.2-GCCcore-13.3.0
Perl 5.38.0
Perl-bundle-CPAN 5.38.2-GCCcore-13.3.0
pigz 2.8-GCCcore-13.3.0
Pillow 10.4.0-GCCcore-13.3.0
Pillow-SIMD 10.4.0-GCCcore-13.3.0
pixman 0.43.4-GCCcore-13.3.0
pkgconf 2.2.0-GCCcore-13.3.0
pkgconf 1.8.0
plotly.py 5.24.1-GCCcore-13.3.0
plotsr 20250407-foss-2024a
PLUMED 2.9.3-foss-2024a
PMIx 5.0.2-GCCcore-13.3.0
poetry 1.8.3-GCCcore-13.3.0
polars 1.31.0-gfbf-2024a
PoreBlazer 4-GCCcore-13.3.0
PostgreSQL 16.4-GCCcore-13.3.0
presto 1.0.0-20240518-foss-2024a-R-4.5.0
pRESTO 0.7.4-foss-2024a
prodigal 2.6.3-GCCcore-13.3.0
PROJ 9.4.1-GCCcore-13.3.0
PRRTE 3.0.5-GCCcore-13.3.0
psutil 6.0.0-GCCcore-13.3.0
psycopg 3.2.3-GCCcore-13.3.0
pugixml 1.15-GCCcore-13.3.0
PuLP 2.8.0-foss-2024a
pybedtools 0.11.0-foss-2024a
pyBigWig 0.3.24-gfbf-2024a
pybind11 2.13.6-GCC-13.3.0
pybind11 2.12.0-GCC-13.3.0
py-cpuinfo 9.0.0-GCCcore-13.3.0
pydantic 2.9.1-GCCcore-13.3.0
pydicom 3.0.1-GCCcore-13.3.0
pydot 3.0.3-GCCcore-13.3.0
pyproj 3.7.0-GCCcore-13.3.0
PySAL 25.7-foss-2024a
Pysam 0.22.1-GCC-13.3.0
pytest 8.3.3-GCCcore-13.3.0
pytest-xdist 3.6.1-GCCcore-13.3.0
Python 3.12.3-GCCcore-13.3.0
Python-bundle-PyPI 2024.06-GCCcore-13.3.0
python-igraph 0.11.9-foss-2024a
python-isal 1.7.0-GCCcore-13.3.0
PyWavelets 1.8.0-foss-2024a
PyYAML 6.0.2-GCCcore-13.3.0
PyZMQ 26.2.0-GCCcore-13.3.0
Qhull 2020.2-GCCcore-13.3.0
Qt6 6.7.2-GCCcore-13.3.0
R 4.5.0-gfbf-2024a
RapidJSON 1.1.0-20240815-GCCcore-13.3.0
rasterio 1.4.3-foss-2024a
R-bundle-Bioconductor 3.21-foss-2024a-R-4.5.0
R-bundle-CRAN 2025.06-foss-2024a
RE2 2024-07-02-GCCcore-13.3.0
re2c 3.1-GCCcore-13.3.0
rpy2 3.6.4-foss-2024a
Rtree 1.4.0-GCCcore-13.3.0
ruffus 2.8.4-GCCcore-13.3.0
Rust 1.86.0-GCCcore-13.3.0
Rust 1.78.0-GCCcore-13.3.0
SAMtools 1.21-GCC-13.3.0
SBGNview 1.22.0-foss-2024a-R-4.5.0
ScaFaCoS 1.0.4-foss-2024a
ScaLAPACK 2.2.0-gompi-2024a-fb
scanpy 1.9.8-foss-2024a
scikit-build 0.17.6-GCCcore-13.3.0
scikit-build-core 0.10.6-GCCcore-13.3.0
scikit-image 0.25.0-foss-2024a
scikit-learn 1.5.2-gfbf-2024a
SciPy-bundle 2024.05-gfbf-2024a
SCOTCH 7.0.6-gompi-2024a
SDL2 2.30.6-GCCcore-13.3.0
Seaborn 0.13.2-gfbf-2024a
SEPP 4.5.5-foss-2024a
setuptools-rust 1.9.0-GCCcore-13.3.0
setuptools-rust 1.11.1-GCCcore-13.3.0
SeuratDisk 20231104-foss-2024a-R-4.5.0
SeuratWrappers 0.4.0-20241122-foss-2024a-R-4.5.0
SGA 0.10.15-GCC-13.3.0
SHAPEIT5 5.1.1-foss-2024a-20240315
Shapely 2.1.0-gfbf-2024a
snappy 1.2.1-GCCcore-13.3.0
SPAdes 4.2.0-GCC-13.3.0
sparsehash 2.0.4-GCCcore-13.3.0
spglib-python 2.5.0-gfbf-2024a
SQLAlchemy 2.0.36-GCCcore-13.3.0
SQLite 3.45.3-GCCcore-13.3.0
STAR 2.7.11b-GCC-13.3.0
statsmodels 0.14.4-gfbf-2024a
SuiteSparse 7.10.1-foss-2024a
SWIG 4.2.1-GCCcore-13.3.0
sympy 1.13.3-gfbf-2024a
SyRI 1.7.1-foss-2024a
Szip 2.1.1-GCCcore-13.3.0
tbb 2021.13.0-GCCcore-13.3.0
Tcl 8.6.14-GCCcore-13.3.0
Thermo-Calc 2025b-foss-2024a
tiktoken 0.9.0-GCCcore-13.3.0
Tk 8.6.14-GCCcore-13.3.0
Tkinter 3.12.3-GCCcore-13.3.0
tornado 6.4.1-GCCcore-13.3.0
tqdm 4.66.5-GCCcore-13.3.0
TRUST4 1.1.6.1-GCC-13.3.0
typing-extensions 4.11.0-GCCcore-13.3.0
UCC 1.3.0-GCCcore-13.3.0
UCX 1.16.0-GCCcore-13.3.0
UCX-CUDA 1.16.0-GCCcore-13.3.0-CUDA-12.6.0
UDUNITS 2.2.28-GCCcore-13.3.0
ULaMDyn 1.1.1-foss-2024a
umap-learn 0.5.7-foss-2024a
UnZip 6.0-GCCcore-13.3.0
USEARCH 11.0.667-i86linux32
utf8proc 2.9.0-GCCcore-13.3.0
util-linux 2.40-GCCcore-13.3.0
VASP 6.5.1-intel-2024a-Wannier90
VEP 115.2-GCC-13.3.0
versioningit 3.1.2-GCCcore-13.3.0
virtualenv 20.26.2-GCCcore-13.3.0
Voro++ 0.4.6-GCCcore-13.3.0
VSEARCH 2.30.0-GCC-13.3.0
VTK 9.3.1-foss-2024a
Wannier90 3.1.0-intel-2024a
Wayland 1.23.0-GCCcore-13.3.0
wrapt 1.16.0-gfbf-2024a
X11 20240607-GCCcore-13.3.0
x264 20240513-GCCcore-13.3.0
x265 3.6-GCCcore-13.3.0
xarray 2024.11.0-gfbf-2024a
Xerces-C++ 3.2.5-GCCcore-13.3.0
XML-LibXML 2.0210-GCCcore-13.3.0
xorg-macros 1.20.1-GCCcore-13.3.0
xtensor 0.25.0-foss-2024a
xugrid 0.14.2-foss-2024a
Xvfb 21.1.14-GCCcore-13.3.0
xxd 9.1.1275-GCCcore-13.3.0
XZ 5.4.5-GCCcore-13.3.0
Yasm 1.3.0-GCCcore-13.3.0
Z3 4.13.0-GCCcore-13.3.0
zarr 2.18.4-foss-2024a
ZeroMQ 4.3.5-GCCcore-13.3.0
Zip 3.0-GCCcore-13.3.0
zlib 1.3.1-GCCcore-13.3.0
zlib 1.3.1
zlib 1.2.13
zlib-ng 2.2.1-GCCcore-13.3.0
Zoltan 3.901-foss-2024a
zstd 1.5.6-GCCcore-13.3.0