BEAR Applications

Velvet 1.2.10-foss-2018b-mt-kmer_191

Deprecated: Use of this version of Velvet is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of Velvet

Sequence assembler for very short reads

Accessing Velvet 1.2.10-foss-2018b-mt-kmer_191

To load the module for Velvet 1.2.10-foss-2018b-mt-kmer_191 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Velvet/1.2.10-foss-2018b-mt-kmer_191

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Velvet website.

Dependencies

This version of Velvet has a direct dependency on: foss/2018b zlib/1.2.11-GCCcore-7.3.0

Other Versions

These versions of Velvet are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th June 2019