BEAR Applications

ViennaRNA 2.4.11-foss-2018b-Python-3.6.6

Deprecated: Use of this version of ViennaRNA is deprecated. More information on our Applications Support and Retention Policy.

There is a newer version of ViennaRNA

The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.

Accessing ViennaRNA 2.4.11-foss-2018b-Python-3.6.6

To load the module for ViennaRNA 2.4.11-foss-2018b-Python-3.6.6 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load ViennaRNA/2.4.11-foss-2018b-Python-3.6.6

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

• BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
• BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the ViennaRNA website.

Dependencies

This version of ViennaRNA has a direct dependency on: foss/2018b GSL/2.5-GCC-7.3.0-2.30 libgd/2.2.5-GCCcore-7.3.0 Perl/5.28.0-GCCcore-7.3.0 Python/3.6.6-foss-2018b X11/20180604-GCCcore-7.3.0

Other Versions

These versions of ViennaRNA are available on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th June 2019