There is a newer version of EIGENSOFT
The EIGENSOFT package combines functionality from
our population genetics methods (Patterson et al. 2006)
and our EIGENSTRAT stratification correction method
(Price et al. 2006). The EIGENSTRAT method uses principal
components analysis to explicitly model ancestry differences between
cases and controls along continuous axes of variation; the resulting
correction is specific to a candidate marker's variation in frequency
across ancestral populations, minimizing spurious associations while
maximizing power to detect true associations. The EIGENSOFT package has
a built-in plotting script and supports multiple file formats and
Accessing EIGENSOFT 7.2.1-foss-2019a
To load the module for EIGENSOFT 7.2.1-foss-2019a please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load EIGENSOFT/7.2.1-foss-2019a
BEAR Apps Version
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the EIGENSOFT website.
This version of EIGENSOFT has a direct dependency on:
These versions of EIGENSOFT are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 11th February 2020