StringTie 2.1.3-GCC-8.3.0

There is a newer install of StringTie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

Accessing StringTie 2.1.3-GCC-8.3.0

To load the module for StringTie 2.1.3-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load StringTie/2.1.3-GCC-8.3.0

BEAR Apps Version

2019b

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the StringTie website.

Dependencies

This version of StringTie has a direct dependency on: GCC/8.3.0 zlib/1.2.11-GCCcore-8.3.0

Required By

This version of StringTie is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Other Versions

These versions of StringTie are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2.2.1-GCC-11.3.0 2022a
2.2.1-GCC-11.2.0 2021b

Last modified on 12th October 2020