SHAPEIT4 4.2.1-foss-2020b

SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.

Accessing SHAPEIT4 4.2.1-foss-2020b

To load the module for SHAPEIT4 4.2.1-foss-2020b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SHAPEIT4/4.2.1-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SHAPEIT4 website.

Dependencies

This version of SHAPEIT4 has a direct dependency on: Boost/1.74.0-GCC-10.2.0 bzip2/1.0.8-GCCcore-10.2.0 foss/2020b HTSlib/1.11-GCC-10.2.0 XZ/5.2.5-GCCcore-10.2.0 zlib/1.2.11-GCCcore-10.2.0

Last modified on 25th August 2021