Paragraph 2.4a-GCC-11.3.0

Graph realignment tools for structural variants. Paragraph aims to facilitate known variants analysis by providing an accurate genotyper for Structural Variations with short-read data.

Accessing Paragraph 2.4a-GCC-11.3.0

To load the module for Paragraph 2.4a-GCC-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load Paragraph/2.4a-GCC-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-emeraldrapids — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Paragraph website.

Dependencies

This version of Paragraph has a direct dependency on: Boost/1.79.0-GCC-11.3.0 GCC/11.3.0 googletest/1.11.0-GCCcore-11.3.0 HTSlib/1.16-GCC-11.3.0 Pysam/0.20.0-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0

Last modified on 27th May 2025