EarlGrey 4.4.0

Earl Grey is a full-automated transposable element (TE) annotation pipeline, leveraging the most widely-used tools and combining these with a consensus elongation process to better define de novo consensus sequences when annotating new genome assemblies.

Accessing EarlGrey 4.4.0

To load the module for EarlGrey 4.4.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load EarlGrey/4.4.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the EarlGrey website.

Last modified on 13th August 2024