NextDenovo 2.5.2-GCCcore-12.2.0

NextDenovo is a string graph-based de novo assembler for long reads (CLR, HiFi and ONT). It uses a "correct-then-assemble" strategy similar to canu (no correction step for PacBio HiFi reads), but requires significantly less computing resources and storages.

Accessing NextDenovo 2.5.2-GCCcore-12.2.0

To load the module for NextDenovo 2.5.2-GCCcore-12.2.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load NextDenovo/2.5.2-GCCcore-12.2.0

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the NextDenovo website.

Dependencies

This version of NextDenovo has a direct dependency on: GCCcore/12.2.0 Paralleltask/0.2.2-GCCcore-12.2.0

Last modified on 27th June 2024