CMSeq 1.0.4-foss-2023a
There is a newer install of CMSeq
CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.Accessing CMSeq 1.0.4-foss-2023a
To load the module for CMSeq 1.0.4-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load CMSeq/1.0.4-foss-2023a
BEAR Apps Version
Architectures
EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the CMSeq website.
Dependencies
This version of CMSeq has a direct dependency on: bcbio-gff/0.7.1-foss-2023a biom-format/2.1.15-foss-2023a Biopython/1.83-foss-2023a foss/2023a Pysam/0.22.0-GCC-12.3.0 Python/3.11.3-GCCcore-12.3.0 SAMtools/1.21-GCC-12.3.0 SciPy-bundle/2023.07-gfbf-2023a
Required By
This version of CMSeq is a direct dependent of: MetaPhlAn/4.1.1-foss-2023a
Other Versions
These versions of CMSeq are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
1.0.4-foss-2022b | 2022b |
1.0.4-foss-2021b | 2021b |
Last modified on 29th April 2025