CMSeq 1.0.4-foss-2023a

There is a newer install of CMSeq

CMSeq is a set of commands to provide an interface to .bam files for coverage and sequence consensus.

Accessing CMSeq 1.0.4-foss-2023a

To load the module for CMSeq 1.0.4-foss-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load CMSeq/1.0.4-foss-2023a

BEAR Apps Version

2023a

Architectures

EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CMSeq website.

Dependencies

This version of CMSeq has a direct dependency on: bcbio-gff/0.7.1-foss-2023a biom-format/2.1.15-foss-2023a Biopython/1.83-foss-2023a foss/2023a Pysam/0.22.0-GCC-12.3.0 Python/3.11.3-GCCcore-12.3.0 SAMtools/1.21-GCC-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of CMSeq is a direct dependent of: MetaPhlAn/4.1.1-foss-2023a

Other Versions

These versions of CMSeq are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 29th April 2025