CheckM 1.0.18-foss-2023a-Python-2.7.18

There is a newer install of CheckM

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes.

Accessing CheckM 1.0.18-foss-2023a-Python-2.7.18

To load the module for CheckM 1.0.18-foss-2023a-Python-2.7.18 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load CheckM/1.0.18-foss-2023a-Python-2.7.18

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CheckM website.

Dependencies

This version of CheckM has a direct dependency on: DendroPy/4.5.2-GCCcore-12.3.0-Python-2.7.18 foss/2023a HMMER/3.4-gompi-2023a matplotlib/2.2.5-foss-2023a-Python-2.7.18 pplacer/1.1.alpha19 prodigal/2.6.3-GCCcore-12.3.0 Pysam/0.20.0-GCC-12.3.0-Python-2.7.18 Python/2.7.18-GCCcore-12.3.0 SciPy-bundle/2024.06-foss-2023a-Python-2.7.18

Required By

This version of CheckM is a direct dependent of: CONCOCT/1.1.0-foss-2023a-Python-2.7.18 metaWRAP/1.4-20230728-foss-2023a-Python-2.7.18

Other Versions

These versions of CheckM are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th March 2025