DEXSeq 1.50.0-foss-2023a-R-4.4.1
The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.Accessing DEXSeq 1.50.0-foss-2023a-R-4.4.1
To load the module for DEXSeq 1.50.0-foss-2023a-R-4.4.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load DEXSeq/1.50.0-foss-2023a-R-4.4.1
BEAR Apps Version
Architectures
EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- DEXSeq 1.50.0
More Information
For more information visit the DEXSeq website.
Dependencies
This version of DEXSeq has a direct dependency on: foss/2023a R/4.4.1-gfbf-2023a R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1
Required By
This version of DEXSeq is a direct dependent of: junctionCounts/1.0.0-20240207-foss-2023a
Last modified on 12th March 2025