DMRcaller 1.36.0-foss-2023a-R-4.4.1
Uses Bisulfite sequencing data in two conditions and identifies differentially methylated regions between the conditions in CG and non-CG context. The input is the CX report files produced by Bismark and the output is a list of DMRs stored as GRanges objects.Accessing DMRcaller 1.36.0-foss-2023a-R-4.4.1
To load the module for DMRcaller 1.36.0-foss-2023a-R-4.4.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
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module load bear-apps/2023a
module load DMRcaller/1.36.0-foss-2023a-R-4.4.1
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- DMRcaller 1.36.0
More Information
For more information visit the DMRcaller website.
Dependencies
This version of DMRcaller has a direct dependency on: foss/2023a R/4.4.1-gfbf-2023a R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1
Required By
This version of DMRcaller is a direct dependent of: BEAR-R-bio/2023a-foss-2023a-R-4.4.1
Last modified on 6th December 2024