PLINK 2.0.0-a.5.17-gfbf-2023a

There is a newer install of PLINK

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

Accessing PLINK 2.0.0-a.5.17-gfbf-2023a

To load the module for PLINK 2.0.0-a.5.17-gfbf-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load PLINK/2.0.0-a.5.17-gfbf-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-emr — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the PLINK website.

Dependencies

This version of PLINK has a direct dependency on: gfbf/2023a libdeflate/1.18-GCCcore-12.3.0 zlib/1.2.13-GCCcore-12.3.0 zstd/1.5.5-GCCcore-12.3.0

Other Versions

These versions of PLINK are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 5th November 2024