RELION 5.0.0-foss-2023a-CUDA-12.1.1
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).Accessing RELION 5.0.0-foss-2023a-CUDA-12.1.1
To load the module for RELION 5.0.0-foss-2023a-CUDA-12.1.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load RELION/5.0.0-foss-2023a-CUDA-12.1.1
BEAR Apps Version
Architectures
EL8-icelake (GPUs: NVIDIA A100, NVIDIA A30)
The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- morphosamplers 0.0.14
- yet_another_imod_wrapper 0.1.1
More Information
For more information visit the RELION website.
Dependencies
This version of RELION has a direct dependency on: ctffind/4.1.14-foss-2023a CUDA/12.1.1 DynaMight/0.0.0.20240319.eef4aa6-foss-2023a-CUDA-12.1.1 einops/0.7.0-GCCcore-12.3.0 FLTK/1.3.8-GCCcore-12.3.0 foss/2023a Ghostscript/10.01.2-GCCcore-12.3.0 LibTIFF/4.5.0-GCCcore-12.3.0 lil-aretomo/0.1.0-foss-2023a lru-dict/1.3.0-GCCcore-12.3.0 makefun/1.15.2-GCCcore-12.3.0 mdocfile/0.1.2-foss-2023a MotionCor2/1.6.4-GCCcore-12.3.0 mrcfile/1.5.0-foss-2023a Python/3.11.3-GCCcore-12.3.0 relion-blush/0.0.1.20240529.7889199-foss-2023a-CUDA-12.1.1 relion-classranker/0.0.1.20250109.8727e78-foss-2023a-CUDA-12.1.1 ResMap/1.1.4 SciPy-bundle/2023.07-gfbf-2023a starfile/0.5.6-foss-2023a topaz/0.2.5.20231120-foss-2023a-CUDA-12.1.1 X11/20230603-GCCcore-12.3.0 xpdf/4.05-GCCcore-12.3.0
Other Versions
These versions of RELION are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 4th March 2025