inferCNV 1.20.0-foss-2023a-R-4.4.1

InferCNV is used to explore tumor single cell RNA-Seq data to identify evidence for somatic large-scale chromosomal copy number alterations, such as gains or deletions of entire chromosomes or large segments of chromosomes.

Accessing inferCNV 1.20.0-foss-2023a-R-4.4.1

To load the module for inferCNV 1.20.0-foss-2023a-R-4.4.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load inferCNV/1.20.0-foss-2023a-R-4.4.1

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• infercnv 1.20.0
• phyclust-0.1-34

More Information

For more information visit the inferCNV website.

Dependencies

This version of inferCNV has a direct dependency on: foss/2023a Python/3.11.3-GCCcore-12.3.0 R/4.4.1-gfbf-2023a R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1 R-bundle-CRAN/2024.06-foss-2023a rjags/4-16-foss-2023a-R-4.4.1

Other Versions

These versions of inferCNV are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 20th December 2024