metaWRAP 1.4-20230728-foss-2023a-Python-2.7.18

MetaWRAP aims to be an easy-to-use metagenomic wrapper suite that accomplishes the core tasks of metagenomic analysis from start to finish: read quality control, assembly, visualization, taxonomic profiling, extracting draft genomes (binning), and functional annotation.

Accessing metaWRAP 1.4-20230728-foss-2023a-Python-2.7.18

To load the module for metaWRAP 1.4-20230728-foss-2023a-Python-2.7.18 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load metaWRAP/1.4-20230728-foss-2023a-Python-2.7.18

BEAR Apps Version

2023a

Architectures

EL8-cascadelakeEL8-icelakeEL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the metaWRAP website.

Dependencies

This version of metaWRAP has a direct dependency on: BLAST+/2.14.1-gompi-2023a bmtagger/3.101-gompi-2023a-Java-11 Bowtie2/2.5.4-GCC-12.3.0-Python-2.7.18 BWA/0.7.17-GCCcore-12.3.0 CheckM/1.0.18-foss-2023a-Python-2.7.18 CONCOCT/1.1.0-foss-2023a-Python-2.7.18 FastQC/0.11.9-Java-11 foss/2023a Kraken2/2.1.3-gompi-2023a KronaTools/2.8.1-GCCcore-12.3.0 MaxBin/2.2.7-gompi-2023a-Python-2.7.18 MEGAHIT/1.2.9-GCCcore-12.3.0-Python-2.7.18 MetaBAT/2.17-GCC-12.3.0 Perl/5.36.1-GCCcore-12.3.0 prokka/1.14.5-gompi-2023a Python/2.7.18-GCCcore-12.3.0 QUAST/5.2.0-foss-2023a-Python-2.7.18 R/4.4.1-gfbf-2023a Salmon/1.10.3-GCC-12.3.0 SAMtools/1.18-GCC-12.3.0 Seaborn/0.9.1-foss-2023a-Python-2.7.18 SPAdes/3.15.5-GCC-12.3.0-Python-2.7.18 taxator-tk/1.5.0-GCC-12.3.0-Python-2.7.18 Trim_Galore/0.6.10-GCCcore-12.3.0-Python-2.7.18

Last modified on 4th March 2025