methylKit 1.30.0-foss-2023a-R-4.4.1
methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing.Accessing methylKit 1.30.0-foss-2023a-R-4.4.1
To load the module for methylKit 1.30.0-foss-2023a-R-4.4.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2023a
module load methylKit/1.30.0-foss-2023a-R-4.4.1
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- fastseg 1.50.0
- methylKit 1.30.0
More Information
For more information visit the methylKit website.
Dependencies
This version of methylKit has a direct dependency on: foss/2023a R/4.4.1-gfbf-2023a R-bundle-Bioconductor/3.19-foss-2023a-R-4.4.1
Required By
This version of methylKit is a direct dependent of: BEAR-R-bio/2023a-foss-2023a-R-4.4.1
Last modified on 6th December 2024