modbam2bed 0.5.3-gfbf-2023a

There is a newer install of modbam2bed

A program to aggregate modified base counts stored in a modified-base BAM (Section 2.1) file to a bedMethyl file.

Accessing modbam2bed 0.5.3-gfbf-2023a

To load the module for modbam2bed 0.5.3-gfbf-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load modbam2bed/0.5.3-gfbf-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the modbam2bed website.

Dependencies

This version of modbam2bed has a direct dependency on: cffi/1.15.1-GCCcore-12.3.0 gfbf/2023a HTSlib/1.18-GCC-12.3.0 libdeflate/1.18-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Required By

This version of modbam2bed is a direct dependent of: modbamtools/0.4.8-gfbf-2023a

Other Versions

These versions of modbam2bed are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 8th November 2024