sourmash 4.8.12-gfbf-2023a

Quickly search, compare, and analyze genomic and metagenomic data sets. sourmash is a k-mer analysis multitool, and we aim to provide stable, robust programmatic and command-line APIs for a variety of sequence comparisons.

Accessing sourmash 4.8.12-gfbf-2023a

To load the module for sourmash 4.8.12-gfbf-2023a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a
module load sourmash/4.8.12-gfbf-2023a

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• cachetools 5.5.0
• deprecation 2.1.0
• mmh3 5.0.1
• screed 1.1.3
• setuptools 75.6.0
• sourmash 4.8.12
• sourmash_utils 0.2

More Information

For more information visit the sourmash website.

Dependencies

This version of sourmash has a direct dependency on: Clang/16.0.6-GCCcore-12.3.0 gfbf/2023a matplotlib/3.7.2-gfbf-2023a Python/3.11.3-GCCcore-12.3.0 Python-bundle-PyPI/2023.06-GCCcore-12.3.0 PyYAML/6.0-GCCcore-12.3.0 SciPy-bundle/2023.07-gfbf-2023a

Last modified on 12th December 2024