pySCENIC 0.12.1-20250109-foss-2024a

There is a newer install of pySCENIC

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Accessing pySCENIC 0.12.1-20250109-foss-2024a

To load the module for pySCENIC 0.12.1-20250109-foss-2024a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2024a
module load pySCENIC/0.12.1-20250109-foss-2024a

BEAR Apps Version

2024a

Architectures

EL8-emeraldrapids — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• arboreto 0.1.6
• boltons 25.0.0
• ctxcore 0.2.0
• cytoolz 1.0.0
• diptest 0.10.0
• frozendict 2.4.7
• interlap 0.2.7
• multiprocessing_on_dill 3.5.0a4
• pyscenic-0.12.1-20250109

More Information

For more information visit the pySCENIC website.

Dependencies

This version of pySCENIC has a direct dependency on: aiohttp/3.10.10-GCCcore-13.3.0 Arrow/17.0.0-gfbf-2024a dask/2024.9.1-gfbf-2024a dill/0.3.9-GCCcore-13.3.0 foss/2024a loompy/3.0.8-foss-2024a networkx/3.4.2-gfbf-2024a Python/3.12.3-GCCcore-13.3.0 PyYAML/6.0.2-GCCcore-13.3.0 scikit-learn/1.5.2-gfbf-2024a tqdm/4.66.5-GCCcore-13.3.0 umap-learn/0.5.7-foss-2024a

Other Versions

These versions of pySCENIC are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th June 2026