Deprecated: Use of this version of Amber is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of AmberAmber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.
Accessing Amber 18-foss-2018b-AmberTools-18-patchlevel-10-8
To load the module for Amber 18-foss-2018b-AmberTools-18-patchlevel-10-8 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Amber/18-foss-2018b-AmberTools-18-patchlevel-10-8
There is a GPU enabled version of this module: Amber 18-fosscuda-2018b-AmberTools-18-patchlevel-10-8
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Amber website.
This version of Amber has a direct dependency on: Boost.Python/1.67.0-foss-2018b-Python-2.7.15 bzip2/1.0.6-GCCcore-7.3.0 foss/2018b matplotlib/2.2.3-foss-2018b-Python-2.7.15 netCDF/4.6.1-foss-2018b netCDF-Fortran/4.4.4-foss-2018b Python/2.7.15-foss-2018b X11/20180604-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0
These versions of Amber are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 3rd June 2019