Amber 18.15-AmberTools-19.8-foss-2019a-Python-2.7.15

Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.

Accessing Amber 18.15-AmberTools-19.8-foss-2019a-Python-2.7.15

To load the module for Amber 18.15-AmberTools-19.8-foss-2019a-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load Amber/18.15-AmberTools-19.8-foss-2019a-Python-2.7.15

There is a GPU enabled version of this module: Amber 18.15-AmberTools-19.8-fosscuda-2019a-Python-2.7.15

BEAR Apps Version

2019a

Architectures

EL8-cascadelakeEL8-haswellUbuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the Amber website.

Dependencies

This version of Amber has a direct dependency on: Boost.Python/1.70.0-gompi-2019a bzip2/1.0.6-GCCcore-8.2.0 foss/2019a matplotlib/2.2.4-foss-2019a-Python-2.7.15 netCDF/4.6.2-gompi-2019a netCDF-Fortran/4.4.5-gompi-2019a Python/2.7.15-GCCcore-8.2.0 X11/20190311-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0

Other Versions

These versions of Amber are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th September 2019