Deprecated: Use of this version of Jellyfish is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of JellyfishJellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
Accessing Jellyfish 2.2.10-foss-2018b
To load the module for Jellyfish 2.2.10-foss-2018b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load Jellyfish/2.2.10-foss-2018b
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the Jellyfish website.
This version of Jellyfish has a direct dependency on: foss/2018b
This version of Jellyfish is a direct dependent of: TraCeR/0.6.0-foss-2018b-Python-3.6.6
These versions of Jellyfish are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 11th July 2019