Deprecated: Use of this version of VCFtools is deprecated. More information on our Applications Support and Retention Policy.
There is a newer version of VCFtoolsThe aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
Accessing VCFtools 0.1.16-foss-2018b-Perl-5.28.0
To load the module for VCFtools 0.1.16-foss-2018b-Perl-5.28.0 please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):
module load VCFtools/0.1.16-foss-2018b-Perl-5.28.0
BEAR Apps Version
EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell
The listed architectures consist of two part: OS-CPU.
- BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
- BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.
For more information visit the VCFtools website.
This version of VCFtools has a direct dependency on: foss/2018b HTSlib/1.9-foss-2018b Perl/5.28.0-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0
This version of VCFtools is a direct dependent of: HAPDeNovo/fe8bcc2-foss-2018b-Python-3.6.6
These versions of VCFtools are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.
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Last modified on 26th July 2019