gffutils 0.9-foss-2018b-Python-2.7.15

Deprecated: Use of this version of gffutils is deprecated. More information on our Applications Support and Retention Policy.

There is a newer install of gffutils

gffutils is a Python package for working with GFF and GTF files in a hierarchical manner. It allows operations which would be complicated or time-consuming using a text-file-only approach.

Accessing gffutils 0.9-foss-2018b-Python-2.7.15

To load the module for gffutils 0.9-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load gffutils/0.9-foss-2018b-Python-2.7.15

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• gffutils 0.9
• pyfaidx 0.5.5.2
• simplejson 3.16.0

More Information

For more information visit the gffutils website.

Dependencies

This version of gffutils has a direct dependency on: Biopython/1.72-foss-2018b-Python-2.7.15 foss/2018b Python/2.7.15-foss-2018b

Required By

This version of gffutils is a direct dependent of: rnaQUAST/1.5.1-foss-2018b-Python-2.7.15

Other Versions

These versions of gffutils are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 4th June 2019