gffutils 0.9-foss-2018b-Python-2.7.15

Deprecated: Use of this version of gffutils is deprecated. More information on our Applications Support and Retention Policy.

gffutils is a Python package for working with GFF and GTF files in a hierarchical manner. It allows operations which would be complicated or time-consuming using a text-file-only approach.

Accessing gffutils 0.9-foss-2018b-Python-2.7.15

To load the module for gffutils 0.9-foss-2018b-Python-2.7.15 please use this command on the BEAR systems (BlueBEAR, BEAR Cloud VMs, and CaStLeS VMs):

module load gffutils/0.9-foss-2018b-Python-2.7.15

BEAR Apps Version




The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR Cloud and CaStLeS VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.


  • gffutils 0.9
  • pyfaidx
  • simplejson 3.16.0

More Information

For more information visit the gffutils website.


This version of gffutils has a direct dependency on: Biopython/1.72-foss-2018b-Python-2.7.15 foss/2018b Python/2.7.15-foss-2018b

Required By

This version of gffutils is a direct dependent of: rnaQUAST/1.5.1-foss-2018b-Python-2.7.15

Last modified on 4th June 2019