minimap2 2.13-foss-2019a

There is a newer install of minimap2

Minimap2 is a fast sequence mapping and alignment program that can find overlaps between long noisy reads, or map long reads or their assemblies to a reference genome optionally with detailed alignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to ~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited test data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replace BWA-MEM for long reads and contig alignment.

Accessing minimap2 2.13-foss-2019a

To load the module for minimap2 2.13-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load minimap2/2.13-foss-2019a

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the minimap2 website.

Dependencies

This version of minimap2 has a direct dependency on: foss/2019a

Required By

This version of minimap2 is a direct dependent of: DeepMod/0.1.1-foss-2019a-Python-3.7.2

Other Versions

These versions of minimap2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 13th March 2020