Bismark 0.22.3-foss-2019b

There is a newer install of Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Accessing Bismark 0.22.3-foss-2019b

To load the module for Bismark 0.22.3-foss-2019b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load Bismark/0.22.3-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Bismark website.

Dependencies

This version of Bismark has a direct dependency on: Bowtie2/2.3.5.1-GCC-8.3.0 foss/2019b Perl/5.30.0-GCCcore-8.3.0 SAMtools/1.10-GCC-8.3.0

Required By

This version of Bismark is a direct dependent of: FastQ_Screen/0.14.1-foss-2019b-Perl-5.30.0

Other Versions

These versions of Bismark are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 17th June 2020