GMAP-GSNAP 2020-09-12-foss-2019b

GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program

Accessing GMAP-GSNAP 2020-09-12-foss-2019b

To load the module for GMAP-GSNAP 2020-09-12-foss-2019b please use this command on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs):

module load GMAP-GSNAP/2020-09-12-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-haswell — Ubuntu20.04-haswell

The listed architectures consist of two part: OS-CPU.

  • BlueBEAR: The OS used on BlueBEAR is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
  • BEAR and CaStLeS Cloud VMs: These VMs can have one of two OSes. Those with access to a BEAR Cloud or CaStLeS VM should check that the listed architectures for an application include the OS of VM being used. The VMs, irrespective of OS, will use the haswell CPU type.

More Information

For more information visit the GMAP-GSNAP website.

Dependencies

This version of GMAP-GSNAP has a direct dependency on: bzip2/1.0.8-GCCcore-8.3.0 foss/2019b zlib/1.2.11-GCCcore-8.3.0

Required By

This version of GMAP-GSNAP is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4 PASApipeline/2.4.1-foss-2019b

Other Versions

These versions of GMAP-GSNAP are available on the BEAR systems (BlueBEAR, BEARCloud VMs, and CaStLeS VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
2019-02-15-foss-2018b 2018b

Last modified on 12th October 2020