MUSCLE 3.8.1551-GCC-8.3.0

There is a newer install of MUSCLE

MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.

Accessing MUSCLE 3.8.1551-GCC-8.3.0

To load the module for MUSCLE 3.8.1551-GCC-8.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load MUSCLE/3.8.1551-GCC-8.3.0

BEAR Apps Version




The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the MUSCLE website.


This version of MUSCLE has a direct dependency on: GCC/8.3.0

Other Versions

These versions of MUSCLE are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version BEAR Apps Version
5.1-GCCcore-11.2.0 2021b

Last modified on 25th June 2021