SIRVsuite 0.1.2-foss-2020b

SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls.

Accessing SIRVsuite 0.1.2-foss-2020b

To load the module for SIRVsuite 0.1.2-foss-2020b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load SIRVsuite/0.1.2-foss-2020b

BEAR Apps Version

2020b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• cycler 0.10.0
• gtfparse 1.2.1
• kiwisolver 1.2.0
• matplotlib 3.3.1
• numpy 1.19.2
• pandas 1.1.3
• pyBigWig 0.3.18
• scipy 1.5.2
• SIRVsuite 0.1.2

More Information

For more information visit the SIRVsuite website.

Dependencies

This version of SIRVsuite has a direct dependency on: cairo/1.16.0-GCCcore-10.2.0 cURL/7.72.0-GCCcore-10.2.0 foss/2020b Pillow/8.0.1-GCCcore-10.2.0 PyCairo/1.20.0-GCCcore-10.2.0 Pysam/0.16.0.1-GCC-10.2.0 Python/3.8.6-GCCcore-10.2.0 zlib/1.2.11-GCCcore-10.2.0

Last modified on 14th December 2023