ANIcalculator 1.0-GCCcore-11.3.0

This tool will calculate the bidirectional average nucleotide identity (gANI) and Alignment Fraction (AF) between two genomes. Required input is the full path to the fna file (nucleotide sequence of genes in fasta format) of each query genome. Either the rRNA and tRNA genes can be excluded, or provided in a list with the -ignoreList option. This is necessary as the presence of tRNA and/or rRNA genes in the fna will artificially inflate the ANI.

Accessing ANIcalculator 1.0-GCCcore-11.3.0

To load the module for ANIcalculator 1.0-GCCcore-11.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load ANIcalculator/1.0-GCCcore-11.3.0

BEAR Apps Version

2022a

Architectures

EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the ANIcalculator website.

Dependencies

This version of ANIcalculator has a direct dependency on: GCCcore/11.3.0 libnsl/2.0.0-GCCcore-11.3.0 Perl/5.34.1-GCCcore-11.3.0

Required By

This version of ANIcalculator is a direct dependent of: dRep/3.4.2-foss-2022a

Last modified on 25th June 2025