CodingQuarry 2.0-foss-2022a

There is a newer install of CodingQuarry

CodingQuarry is a highly accurate, self-training GHMM fungal gene predictor designed to work with assembled, aligned RNA-seq transcripts.

Accessing CodingQuarry 2.0-foss-2022a

To load the module for CodingQuarry 2.0-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load CodingQuarry/2.0-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the CodingQuarry website.

Dependencies

This version of CodingQuarry has a direct dependency on: Biopython/1.79-foss-2022a foss/2022a Python/3.10.4-GCCcore-11.3.0

Required By

This version of CodingQuarry is a direct dependent of: funannotate/1.8.17-foss-2022a

Other Versions

These versions of CodingQuarry are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th August 2024