LABRAT 0.3.0-foss-2022a

Lightweight Alignment Based Resolution of Alternative Three Prime Ends

Accessing LABRAT 0.3.0-foss-2022a

To load the module for LABRAT 0.3.0-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load LABRAT/0.3.0-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• argcomplete 2.0.5
• argh 0.27.2
• gffutils 0.11.0
• LABRAT 0.3.0

More Information

For more information visit the LABRAT website.

Dependencies

This version of LABRAT has a direct dependency on: Biopython/1.79-foss-2022a foss/2022a pyfaidx/0.7.1-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 Salmon/1.9.0-GCC-11.3.0 SciPy-bundle/2022.05-foss-2022a statsmodels/0.13.1-foss-2022a

Last modified on 25th April 2024