PASA 2.5.2-foss-2022a

PASA, acronym for Program to Assemble Spliced Alignments (and pronounced 'pass-uh'), is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript alignments.

Accessing PASA 2.5.2-foss-2022a

To load the module for PASA 2.5.2-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load PASA/2.5.2-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the PASA website.

Dependencies

This version of PASA has a direct dependency on: FASTA/36.3.8i-GCC-11.3.0 foss/2022a GMAP-GSNAP/2023-02-17-GCC-11.3.0 minimap2/2.24-GCCcore-11.3.0 pblat/2.5.1-foss-2022a SQLite/3.38.3-GCCcore-11.3.0

Required By

This version of PASA is a direct dependent of: funannotate/1.8.17-foss-2022a

Last modified on 12th August 2024