dRep 3.4.2-foss-2022a

dRep is a python program which performs rapid pair-wise comparison of genome sets. One of it’s major purposes is for genome de-replication, but it can do a lot more.

Accessing dRep 3.4.2-foss-2022a

To load the module for dRep 3.4.2-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load dRep/3.4.2-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

• dRep 3.4.2

More Information

For more information visit the dRep website.

Dependencies

This version of dRep has a direct dependency on: ANIcalculator/1.0-GCCcore-11.3.0 Biopython/1.79-foss-2022a CheckM/1.2.2-foss-2022a FastANI/1.33-GCC-11.3.0 foss/2022a Mash/2.3-GCC-11.3.0 matplotlib/3.5.2-foss-2022a MUMmer/4.0.0rc1-GCCcore-11.3.0 prodigal/2.6.3-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0 scikit-learn/1.1.2-foss-2022a SciPy-bundle/2022.05-foss-2022a Seaborn/0.12.1-foss-2022a tqdm/4.64.0-GCCcore-11.3.0

Last modified on 25th June 2025