mapDamage 2.2.2-foss-2022a

mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.

Accessing mapDamage 2.2.2-foss-2022a

To load the module for mapDamage 2.2.2-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load mapDamage/2.2.2-foss-2022a

BEAR Apps Version

2022a

Architectures

EL8-sapphirerapids

The listed architectures consist of two parts: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the mapDamage website.

Dependencies

This version of mapDamage has a direct dependency on: foss/2022a Pysam/0.19.1-GCC-11.3.0 Python/3.10.4-GCCcore-11.3.0 R/4.2.3-foss-2022a seqtk/1.3-GCC-11.3.0

Last modified on 19th May 2025